C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prominin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028855 Prom2-001 ENSMUSG00000027376 10090 - 2:127526473-127541467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028855
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028855 0.253±0.25 0.123±0.07 0.084±0.05 12.952±4.45 0.061±0.03 0.044±0.02 7.102±2.11 1.229±1.20 1.903±1.51 0.019±0.01 0.789±0.38 1.915±2.52 2.172±2.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0005886 IDA plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0005902 ISS microvillus
GO:0005929 ISS cilium
GO:0009986 IDA cell surface
GO:0015485 ISS cholesterol binding
GO:0031346 IEA positive regulation of cell projection organization
GO:0031410 ISS cytoplasmic vesicle
GO:0042995 IEA cell projection
GO:0043088 IEA regulation of Cdc42 GTPase activity
GO:0044393 ISS microspike
GO:0045121 ISS membrane raft
GO:0048550 IEA negative regulation of pinocytosis
GO:0070062 IEA extracellular vesicular exosome
GO:0071914 IDA prominosome
GO:2001287 IEA negative regulation of caveolin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317620 PROM2-201 protein_coding Homo_sapiens 0 1917
ENST00000317668 PROM2-001 protein_coding Homo_sapiens 0 1884
ENST00000403131 PROM2-002 protein_coding Homo_sapiens 0 1884
ENST00000431567 PROM2-005 nonsense_mediated_decay Homo_sapiens 0 1323
ENST00000462029 PROM2-011 processed_transcript Homo_sapiens 0 213
ENST00000478295 PROM2-008 retained_intron Homo_sapiens 0 287
ENST00000487138 PROM2-003 retained_intron Homo_sapiens 0 1240
ENST00000495540 PROM2-010 processed_transcript Homo_sapiens 0 195

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