C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroblastoma ras oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029445 Nras-001 ENSMUSG00000027852 10090 + 3:103058339-103067914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029445 14.450±1.54 3.594±1.16 12.396±1.29 15.380±9.65 11.427±1.31 5.053±1.15 6.149±0.37 7.042±0.60 8.820±5.07 15.298±3.42 4.740±0.50 10.450±3.00 15.842±8.35 14.651±6.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WS CIL_0006WS_0002 CGP 3:103058339-103099714

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0007265 TAS Ras protein signal transduction
GO:0008284 IGI positive regulation of cell proliferation
GO:0008542 IGI visual learning
GO:0016020 IDA membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0032228 IGI regulation of synaptic transmission, GABAergic
GO:0032403 ISO protein complex binding
GO:0035022 IGI positive regulation of Rac protein signal transduction
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0045596 IDA negative regulation of cell differentiation
GO:0048169 IGI regulation of long-term neuronal synaptic plasticity
GO:0048642 IDA negative regulation of skeletal muscle tissue development
GO:0051146 IGI striated muscle cell differentiation
GO:0051726 TAS regulation of cell cycle
GO:0060441 IDA epithelial tube branching involved in lung morphogenesis
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000013816 zgc:55558-001 protein_coding Danio_rerio 0 361
ENSDART00000100961 zgc:55558-002 protein_coding Danio_rerio 0 361
ENSDART00000141875 zgc:55558-003 processed_transcript Danio_rerio 0 243
ENST00000369535 NRAS-001 protein_coding Homo_sapiens 0 1136

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