C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029588 Larp7-201 ENSMUSG00000027968 10090 - 3:127536954-127553348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029588 1.405±0.52 0.156±0.08 5.972±1.11 13.324±8.25 0.621±0.24 0.532±0.17 2.008±0.60 1.030±0.55 5.225±5.55 1.264±0.24 2.364±0.62 5.240±10.36 15.629±14.89 112.634±156.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0002 VISTA 3:127326841-127927904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0030529 IEA ribonucleoprotein complex
GO:0035562 IGI negative regulation of chromatin binding
GO:0036093 IMP germ cell proliferation
GO:1900087 IMP positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324052 LARP7-201 protein_coding Homo_sapiens 0 1297
ENST00000344442 LARP7-001 protein_coding Homo_sapiens 0 1297
ENST00000505034 LARP7-004 protein_coding Homo_sapiens 0 773
ENST00000507443 LARP7-009 protein_coding Homo_sapiens 0 355
ENST00000508577 LARP7-006 protein_coding Homo_sapiens 0 324
ENST00000509061 LARP7-002 protein_coding Homo_sapiens 0 1297
ENST00000512589 LARP7-010 nonsense_mediated_decay Homo_sapiens 6.99949e-42 174

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