C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029707 Gpatch4-201 ENSMUSG00000028069 10090 + 3:88043108-88055990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029707
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029707 3.374±1.65 1.597±0.34 3.135±0.36 14.461±9.18 2.428±0.45 1.926±0.70 1.992±0.12 2.241±0.40 5.785±4.50 2.538±0.42 8.247±0.61 7.828±7.22 14.769±15.85 8.068±10.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368232 GPATCH4-001 protein_coding Homo_sapiens 0 675
ENST00000415314 GPATCH4-009 protein_coding Homo_sapiens 0 281
ENST00000438976 GPATCH4-015 protein_coding Homo_sapiens 0 641
ENST00000463513 GPATCH4-004 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000473910 GPATCH4-002 retained_intron Homo_sapiens 9.00054e-42 176
ENST00000474904 GPATCH4-003 nonsense_mediated_decay Homo_sapiens 3e-27 126
ENST00000494414 GPATCH4-007 retained_intron Homo_sapiens 0 224
ENST00000497287 GPATCH4-006 processed_transcript Homo_sapiens 0 224
ENST00000498641 GPATCH4-008 retained_intron Homo_sapiens 5e-28 128
ENST00000529520 GPATCH4-016 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000531129 GPATCH4-013 processed_transcript Homo_sapiens 0 313

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