C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer anti-estrogen resistance 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029766 Bcar3-201 ENSMUSG00000028121 10090 + 3:122419780-122530180 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029766 19.967±13.43 19.155±1.11 13.042±2.46 3.495±2.94 7.623±2.78 4.248±1.06 1.280±0.61 4.233±0.58 3.889±1.45 11.977±1.71 0.667±0.46 16.358±3.18 23.348±14.51 2.564±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DH CIL_0009DH_0002 VISTA 3:121992915-122594267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002089 IMP lens morphogenesis in camera-type eye
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0007264 IEA small GTPase mediated signal transduction
GO:0033138 IMP positive regulation of peptidyl-serine phosphorylation
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260502 BCAR3-001 protein_coding Homo_sapiens 0 2444
ENST00000370243 BCAR3-002 protein_coding Homo_sapiens 0 2431
ENST00000370244 BCAR3-003 protein_coding Homo_sapiens 0 2433
ENST00000370247 BCAR3-004 protein_coding Homo_sapiens 0 2093
ENST00000466632 BCAR3-006 processed_transcript Homo_sapiens 0 601
ENST00000479503 BCAR3-008 processed_transcript Homo_sapiens 1.96182e-44 182
ENST00000490377 BCAR3-007 processed_transcript Homo_sapiens 0 446
ENST00000539242 BCAR3-201 protein_coding Homo_sapiens 0 1404

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