C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029839 Spata1-001 ENSMUSG00000028188 10090 - 3:146457203-146499753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000029839
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000029839 0.721±0.00 0.525±0.16 0.397±0.02 0.742±0.25 1.290±0.36 0.800±0.34 63.665±3.31

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370625 CTBS-003 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000370630 CTBS-001 protein_coding Homo_sapiens 0 250
ENST00000370638 SPATA1-007 processed_transcript Homo_sapiens 0 734
ENST00000431031 SPATA1-001 processed_transcript Homo_sapiens 0 741
ENST00000460286 SPATA1-004 processed_transcript Homo_sapiens 0 235
ENST00000465118 CTBS-004 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000473108 SPATA1-005 processed_transcript Homo_sapiens 0 414
ENST00000477677 CTBS-002 processed_transcript Homo_sapiens 0 244
ENST00000485121 SPATA1-006 processed_transcript Homo_sapiens 0 592
ENST00000490879 SPATA1-008 processed_transcript Homo_sapiens 0 741
ENST00000554297 SPATA1-009 transcribed_unprocessed_pseudogene Homo_sapiens 0 621

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