C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear autoantigenic sperm protein (histone-binding)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030456 Nasp-001 ENSMUSG00000028693 10090 - 4:116601609-116627941 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000030456
Transcript ID Adrenal Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000030456 0.387±0.02 10.684±3.19 0.605±0.00 0.680±0.00 0.471±0.00 4.734±0.51 0.629±0.17 8.534±12.98 30.054±30.17 681.836±1212.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PU CIL_0001PU_0002 CGP 4:116596654-116627941
CIL_0001PT CIL_0001PT_0002 CGP 4:116601052-116651680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0042393 IDA histone binding
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350030 NASP-001 protein_coding Homo_sapiens 0 2525
ENST00000351223 NASP-005 protein_coding Homo_sapiens 0 1260
ENST00000372052 NASP-004 protein_coding Homo_sapiens 0 1260
ENST00000437362 NASP-006 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000437901 NASP-007 protein_coding Homo_sapiens 0 616
ENST00000453748 NASP-002 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000464190 NASP-008 retained_intron Homo_sapiens 0 614
ENST00000470768 NASP-009 protein_coding Homo_sapiens 0 662
ENST00000472408 NASP-010 retained_intron Homo_sapiens 0 399
ENST00000481782 NASP-003 retained_intron Homo_sapiens 0 1258
ENST00000525515 NASP-015 protein_coding Homo_sapiens 0 455
ENST00000527470 NASP-018 protein_coding Homo_sapiens 0 411
ENST00000528084 NASP-012 nonsense_mediated_decay Homo_sapiens 0 364
ENST00000528238 NASP-016 protein_coding Homo_sapiens 7e-39 165
ENST00000529239 AC022182.2-001 processed_pseudogene Homo_sapiens 0 1703
ENST00000529333 NASP-023 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000530073 NASP-011 processed_transcript Homo_sapiens 0 1258
ENST00000530840 NASP-014 nonsense_mediated_decay Homo_sapiens 5e-23 111
ENST00000531532 NASP-013 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000531612 NASP-020 protein_coding Homo_sapiens 0 353
ENST00000534101 NASP-022 processed_transcript Homo_sapiens 0 438
ENST00000534450 NASP-019 protein_coding Homo_sapiens 0 529
ENST00000537798 NASP-201 protein_coding Homo_sapiens 0 2074

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