C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RuvB-like protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032165 Ruvbl1-001 ENSMUSG00000030079 10090 + 6:88465409-88497572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032165
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032165 16.458±6.24 13.875±3.53 15.879±2.40 35.355±9.78 14.456±1.43 9.660±1.23 7.657±1.52 12.469±0.21 23.993±16.59 11.952±3.08 10.210±0.89 36.829±16.02 48.167±38.90 19.215±7.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JN CIL_0005JN_0002 CGP 6:88257334-88497572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000812 ISS Swr1 complex
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007067 IEA mitotic nuclear division
GO:0030529 IDA ribonucleoprotein complex
GO:0032508 IEA DNA duplex unwinding
GO:0035267 ISS NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043141 IEA ATP-dependent 5'-3' DNA helicase activity
GO:0043234 IEA protein complex
GO:0043967 ISS histone H4 acetylation
GO:0043968 ISS histone H2A acetylation
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322623 RUVBL1-001 protein_coding Homo_sapiens 0 1748
ENST00000464873 RUVBL1-002 protein_coding Homo_sapiens 0 1216
ENST00000472125 RUVBL1-003 protein_coding Homo_sapiens 0 601
ENST00000478892 RUVBL1-004 protein_coding Homo_sapiens 0 521
ENST00000585057 RUVBL1-008 nonsense_mediated_decay Homo_sapiens 0 470

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