C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032585 Pop4-201 ENSMUSG00000030423 10090 - 7:38262820-38271348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032585 8.006±0.49 7.145±2.29 18.010±3.02 19.230±10.91 5.043±2.60 4.232±0.93 5.221±0.30 5.396±0.74 7.504±3.67 4.505±0.86 5.967±0.66 13.453±9.23 15.673±5.14 7.903±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000835 CIL_000835_0002 VISTA 7:37670403-38271286
CIL_0008TZ CIL_0008TZ_0002 VISTA 7:37750392-38351469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000171 IBA ribonuclease MRP activity
GO:0000172 IBA ribonuclease MRP complex
GO:0004526 IBA ribonuclease P activity
GO:0005515 IEA protein binding
GO:0005655 IEA nucleolar ribonuclease P complex
GO:0006364 IBA rRNA processing
GO:0006379 IEA mRNA cleavage
GO:0008033 IEA tRNA processing
GO:0030677 IBA ribonuclease P complex
GO:0033204 IBA ribonuclease P RNA binding
GO:0090501 IBA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221770 POP4-002 protein_coding Homo_sapiens 0 477
ENST00000585603 POP4-001 protein_coding Homo_sapiens 0 676
ENST00000586136 POP4-006 processed_transcript Homo_sapiens 0 383
ENST00000586420 POP4-012 protein_coding Homo_sapiens 0 488
ENST00000586823 POP4-004 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000588551 POP4-008 retained_intron Homo_sapiens 0 189
ENST00000590688 POP4-005 protein_coding Homo_sapiens 0 305
ENST00000591061 POP4-011 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000591824 POP4-007 processed_transcript Homo_sapiens 0 636
ENST00000592749 POP4-010 retained_intron Homo_sapiens 0 307
ENST00000592759 POP4-009 processed_transcript Homo_sapiens 0 499

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