C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor-like 2 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034228 Arl2bp-201 ENSMUSG00000031776 10090 + 8:94666755-94674417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034228
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034228 45.070±15.14 62.568±7.16 45.402±4.12 49.790±24.62 22.636±5.62 32.861±17.01 11.834±2.33 31.678±5.39 8.932±6.95 43.684±14.48 3.382±0.04 42.374±21.97 14.759±6.83 93.800±42.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000490 CIL_000490_0002 CGP 8:94601955-94674417
CIL_00048Z CIL_00048Z_0002 CGP 8:94666755-94696242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0005083 ISO small GTPase regulator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005758 IEA mitochondrial intermembrane space
GO:0005813 IEA centrosome
GO:0005929 IEA cilium
GO:0030496 IEA midbody
GO:0042517 ISS positive regulation of tyrosine phosphorylation of Stat3 protein
GO:0050790 ISO regulation of catalytic activity
GO:0051457 ISS maintenance of protein location in nucleus
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219204 ARL2BP-001 protein_coding Homo_sapiens 0 603
ENST00000540773 RP1-267D11.1-001 processed_pseudogene Homo_sapiens 5e-38 159
ENST00000550907 ARL2BPP2-001 processed_pseudogene Homo_sapiens 0 372
ENST00000562023 ARL2BP-005 protein_coding Homo_sapiens 7e-37 158
ENST00000563234 ARL2BP-002 protein_coding Homo_sapiens 0 448
ENST00000564376 PLLP-005 processed_transcript Homo_sapiens 7e-26 121
ENST00000565794 ARL2BP-004 processed_transcript Homo_sapiens 4e-21 104
ENST00000576706 ARL2BPP8-001 processed_pseudogene Homo_sapiens 0 294
ENST00000584870 ARL2BPP1-001 processed_pseudogene Homo_sapiens 0 294
ENST00000613167 PLLP-004 protein_coding Homo_sapiens 5e-34 152

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