C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: timeless interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034964 Tipin-201 ENSMUSG00000032397 10090 + 9:64281607-64304792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034964
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034964 2.713±1.15 0.785±0.47 5.834±0.75 7.864±2.05 2.143±1.12 1.507±0.15 1.573±0.16 1.613±0.52 19.434±21.90 1.220±0.57 3.098±0.97 3.617±4.15 13.625±8.95 3.469±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q7 CIL_0008Q7_0002 VISTA 9:63744784-64346949
CIL_0004FF CIL_0004FF_0002 CGP 9:64281607-64341288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000076 ISS DNA replication checkpoint
GO:0000077 IMP DNA damage checkpoint
GO:0000790 ISS nuclear chromatin
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0007067 IEA mitotic nuclear division
GO:0008284 ISS positive regulation of cell proliferation
GO:0009411 IMP response to UV
GO:0031573 ISS intra-S DNA damage checkpoint
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044770 ISS cell cycle phase transition
GO:0048478 IEA replication fork protection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261881 TIPIN-001 protein_coding Homo_sapiens 0 706
ENST00000425348 RP3-339A18.3-001 processed_pseudogene Homo_sapiens 0 604
ENST00000562124 TIPIN-003 protein_coding Homo_sapiens 0 706
ENST00000566524 TIPIN-002 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000568216 TIPIN-005 protein_coding Homo_sapiens 0 416
ENST00000570133 RP11-332G1.1-001 processed_pseudogene Homo_sapiens 0 538
ENST00000570251 TIPIN-004 protein_coding Homo_sapiens 0 346

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