C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034966 Rpl4-201 ENSMUSG00000032399 10090 + 9:64173387-64178562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034966
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034966 257.035±104.48 197.743±6.80 629.039±27.08 337.420±48.43 277.370±76.32 346.472±59.75 161.799±15.77 234.493±62.52 516.560±325.20 227.190±25.15 305.168±16.63 530.528±350.55 826.180±439.71 92.970±76.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R9 CIL_0008R9_0002 VISTA 9:63580198-64181507
CIL_0008Q7 CIL_0008Q7_0002 VISTA 9:63744784-64346949

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307961 RPL4-001 protein_coding Homo_sapiens 0 1435
ENST00000413888 RPL4P5-001 processed_pseudogene Homo_sapiens 0 1258
ENST00000422486 RPL4P4-001 processed_pseudogene Homo_sapiens 0 1351
ENST00000428881 RPL4P3-001 processed_pseudogene Homo_sapiens 0 1170
ENST00000438116 RPL4P6-001 processed_pseudogene Homo_sapiens 0 896
ENST00000447259 RPL4P2-001 processed_pseudogene Homo_sapiens 0 1162
ENST00000561554 RPL4-014 retained_intron Homo_sapiens 0 237
ENST00000561775 RPL4-006 retained_intron Homo_sapiens 0 990
ENST00000563473 RPL4-016 processed_transcript Homo_sapiens 0 377
ENST00000564439 RPL4-011 retained_intron Homo_sapiens 0 636
ENST00000564647 RPL4-015 retained_intron Homo_sapiens 0 793
ENST00000566039 RPL4-007 retained_intron Homo_sapiens 0 968
ENST00000566491 RPL4-008 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000566622 RPL4-013 retained_intron Homo_sapiens 0 778
ENST00000566624 RPL4-009 retained_intron Homo_sapiens 0 634
ENST00000567229 RPL4-005 retained_intron Homo_sapiens 0 481
ENST00000568588 RPL4-020 protein_coding Homo_sapiens 0 1384
ENST00000569438 RPL4-012 protein_coding Homo_sapiens 0 630
ENST00000569696 RPL4-010 protein_coding Homo_sapiens 0 523
ENST00000571381 RPL4P5-001 processed_pseudogene Homo_sapiens 0 1258

Loading