C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Eph receptor B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035129 Ephb1-001 ENSMUSG00000032537 10090 - 9:101922128-102354693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035129 0.497±0.13 0.308±0.00 0.332±0.04 14.612±3.93 0.255±0.12 0.170±0.00 0.488±0.12 0.730±0.34 0.138±0.00 0.266±0.12 0.130±0.03 0.691±0.31 1.114±1.24 0.635±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 ISS angiogenesis
GO:0005005 ISS transmembrane-ephrin receptor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005887 ISS integral component of plasma membrane
GO:0007411 IDA axon guidance
GO:0008046 IDA axon guidance receptor activity
GO:0016020 IDA membrane
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0021545 IMP cranial nerve development
GO:0021631 IMP optic nerve morphogenesis
GO:0021952 IDA central nervous system projection neuron axonogenesis
GO:0022008 IMP neurogenesis
GO:0030010 IMP establishment of cell polarity
GO:0030424 IDA axon
GO:0031290 IDA retinal ganglion cell axon guidance
GO:0031589 ISS cell-substrate adhesion
GO:0031901 ISS early endosome membrane
GO:0045121 IDA membrane raft
GO:0046328 ISS regulation of JNK cascade
GO:0046777 ISS protein autophosphorylation
GO:0048013 ISS ephrin receptor signaling pathway
GO:0048593 IMP camera-type eye morphogenesis
GO:0050965 IMP detection of temperature stimulus involved in sensory perception of pain
GO:0051965 IMP positive regulation of synapse assembly
GO:0060326 IMP cell chemotaxis
GO:0060996 IMP dendritic spine development
GO:0060997 IMP dendritic spine morphogenesis
GO:0061351 IMP neural precursor cell proliferation
GO:0070062 IEA extracellular vesicular exosome
GO:0070372 ISS regulation of ERK1 and ERK2 cascade
GO:1901214 IEA regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098632 epha4a-201 protein_coding Danio_rerio 0 412
ENSDART00000004338 epha4l-001 protein_coding Danio_rerio 0 379
ENSDART00000149895 epha4a-001 protein_coding Danio_rerio 0 305
ENSDART00000025428 epha2a-001 protein_coding Danio_rerio 0 204
ENSDART00000149099 epha2a-002 retained_intron Danio_rerio 2e-25 122
ENST00000358173 EPHB4-001 protein_coding Homo_sapiens 0 686
ENST00000360620 EPHB4-005 protein_coding Homo_sapiens 0 686
ENST00000398015 EPHB1-005 protein_coding Homo_sapiens 0 5522
ENST00000460895 EPHB1-004 protein_coding Homo_sapiens 0 462
ENST00000474732 EPHB1-011 protein_coding Homo_sapiens 0 619
ENST00000482618 EPHB1-007 nonsense_mediated_decay Homo_sapiens 0 1526
ENST00000487222 EPHB4-002 retained_intron Homo_sapiens 0 686
ENST00000488154 EPHB1-009 processed_transcript Homo_sapiens 0 619
ENST00000488992 EPHB1-014 retained_intron Homo_sapiens 0 544
ENST00000493838 EPHB1-006 protein_coding Homo_sapiens 0 3086
ENST00000616502 EPHB4-201 protein_coding Homo_sapiens 0 686
ENST00000617754 EPHB1-201 protein_coding Homo_sapiens 0 2595

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