C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nephronophthisis 3 (adolescent)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035167 Nphp3-201 ENSMUSG00000032558 10090 + 9:104002544-104043811 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000035167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000035167 5.109±0.10 2.504±0.22 4.867±0.77 4.328±0.59 3.481±0.19 3.452±0.21 2.119±0.11 2.960±0.55 5.710±0.94 4.345±0.00 3.101±0.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005929 ISS cilium
GO:0006629 IMP lipid metabolic process
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0007368 IMP determination of left/right symmetry
GO:0016055 IEA Wnt signaling pathway
GO:0030198 IMP extracellular matrix organization
GO:0030814 IMP regulation of cAMP metabolic process
GO:0048496 IMP maintenance of organ identity
GO:0060271 ISS cilium morphogenesis
GO:0060993 IMP kidney morphogenesis
GO:0072372 ISS primary cilium
GO:0090090 ISS negative regulation of canonical Wnt signaling pathway
GO:0097543 IDA ciliary inversin compartment
GO:0097546 IDA ciliary base
GO:2000095 ISS regulation of Wnt signaling pathway, planar cell polarity pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337331 NPHP3-006 protein_coding Homo_sapiens 0 3976
ENST00000383282 NPHP3-201 protein_coding Homo_sapiens 0 464
ENST00000465756 NPHP3-002 nonsense_mediated_decay Homo_sapiens 0 1696
ENST00000469232 NPHP3-003 nonsense_mediated_decay Homo_sapiens 0 1146
ENST00000471145 NPHP3-008 processed_transcript Homo_sapiens 0 368
ENST00000471702 NPHP3-ACAD11-001 nonsense_mediated_decay Homo_sapiens 0 2069
ENST00000474871 NPHP3-005 retained_intron Homo_sapiens 0 937
ENST00000476742 NPHP3-009 processed_transcript Homo_sapiens 0 623
ENST00000490993 NPHP3-004 retained_intron Homo_sapiens 0 1646
ENST00000493732 NPHP3-007 retained_intron Homo_sapiens 0 538

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