C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox gene expressed in ES cells
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035433 Hesx1-001 ENSMUSG00000040726 10090 + 14:27000362-27002329 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035433
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035433 0.189±0.09 0.059±0.03 0.062±0.00 0.200±0.15 0.073±0.00 0.067±0.00 0.096±0.06 3.677±2.16 0.042±0.00 0.031±0.00 0.136±0.06 0.305±0.33 0.077±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000CC CIL_0000CC_0002 CGP 14:26918988-27002329
CIL_00002Y CIL_00002Y_0002 CGP 14:27000362-27107286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007420 IMP brain development
GO:0008022 IPI protein C-terminus binding
GO:0008134 NAS transcription factor binding
GO:0030916 IMP otic vesicle formation
GO:0043565 IEA sequence-specific DNA binding
GO:0043584 IMP nose development
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0047485 IPI protein N-terminus binding
GO:0048853 IMP forebrain morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295934 HESX1-001 protein_coding Homo_sapiens 0 558
ENST00000473921 HESX1-002 protein_coding Homo_sapiens 7e-40 169

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