C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell cycle activator and apoptosis regulator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035612 Ccar2-201 ENSMUSG00000033712 10090 - 14:70138177-70153811 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035612
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035612 10.396±3.08 17.095±2.36 16.308±0.95 43.354±9.06 10.382±2.10 16.098±1.39 6.413±0.93 11.737±0.60 7.534±2.93 16.742±0.78 5.215±0.35 21.371±7.03 13.470±4.79 21.173±4.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U4 CIL_0000U4_0002 CGP 14:70077445-70138191

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 ISS nuclear chromatin
GO:0000993 ISS RNA polymerase II core binding
GO:0004857 ISS enzyme inhibitor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005681 ISS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0005759 IEA mitochondrial matrix
GO:0006397 IEA mRNA processing
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0008380 ISS RNA splicing
GO:0009411 ISS response to UV
GO:0019899 IEA enzyme binding
GO:0031647 ISS regulation of protein stability
GO:0032435 ISS negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032784 ISS regulation of DNA-templated transcription, elongation
GO:0042752 IMP regulation of circadian rhythm
GO:0043065 ISS positive regulation of apoptotic process
GO:0043086 ISS negative regulation of catalytic activity
GO:0043653 IEA mitochondrial fragmentation involved in apoptotic process
GO:0044609 ISS DBIRD complex
GO:0044822 IEA poly(A) RNA binding
GO:1902230 ISS negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
GO:2000003 ISS positive regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308511 CCAR2-001 protein_coding Homo_sapiens 0 3687
ENST00000389279 CCAR2-002 protein_coding Homo_sapiens 0 3456
ENST00000518989 CCAR2-004 protein_coding Homo_sapiens 0 614
ENST00000520536 CCAR2-015 retained_intron Homo_sapiens 0 950
ENST00000520738 CCAR2-009 protein_coding Homo_sapiens 0 2200
ENST00000520861 CCAR2-003 protein_coding Homo_sapiens 0 2658
ENST00000521020 CCAR2-018 retained_intron Homo_sapiens 0 405
ENST00000521301 CCAR2-011 protein_coding Homo_sapiens 0 414
ENST00000521436 CCAR2-010 retained_intron Homo_sapiens 0 654
ENST00000521837 CCAR2-005 protein_coding Homo_sapiens 0 649
ENST00000522599 CCAR2-013 protein_coding Homo_sapiens 0 987
ENST00000523349 CCAR2-006 protein_coding Homo_sapiens 0 691
ENST00000523801 CCAR2-007 protein_coding Homo_sapiens 0 662
ENST00000613179 CCAR2-201 protein_coding Homo_sapiens 0 1423

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