C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor suppressing subtransferable candidate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035657 Tssc1-201 ENSMUSG00000036613 10090 + 12:28751828-28867491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035657
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035657 7.228±0.76 7.628±1.90 8.526±0.87 19.935±8.74 9.080±3.70 13.982±1.39 4.181±0.82 7.276±1.50 8.080±4.91 7.522±0.67 3.105±0.37 11.592±4.05 8.922±3.16 7.094±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0002 VISTA 12:28516804-29118905
CIL_0001Q5 CIL_0001Q5_0002 CGP 12:28690629-28867491
CIL_0005O6 CIL_0005O6_0002 CGP 12:28751828-29923209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063738 tssc1-201 protein_coding Danio_rerio 0 809
ENST00000382125 TSSC1-001 protein_coding Homo_sapiens 0 1310
ENST00000398659 TSSC1-003 protein_coding Homo_sapiens 0 979
ENST00000406835 TSSC1-006 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000435721 TSSC1-009 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000441271 TSSC1-007 protein_coding Homo_sapiens 0 562
ENST00000443925 TSSC1-004 protein_coding Homo_sapiens 0 595
ENST00000444776 TSSC1-010 protein_coding Homo_sapiens 0 331
ENST00000455162 TSSC1-008 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000462515 TSSC1-011 processed_transcript Homo_sapiens 0 230
ENST00000463662 TSSC1-005 processed_transcript Homo_sapiens 0 425
ENST00000470625 TSSC1-015 retained_intron Homo_sapiens 0 213
ENST00000478754 TSSC1-002 processed_transcript Homo_sapiens 0 979
ENST00000482570 TSSC1-012 retained_intron Homo_sapiens 0 496
ENST00000496433 TSSC1-014 retained_intron Homo_sapiens 0 571

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