C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collectin sub-family member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036136 Colec11-201 ENSMUSG00000036655 10090 - 12:28594173-28623290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036136 0.731±0.09 1.141±0.19 1.980±0.44 0.237±0.00 0.737±0.19 0.133±0.08 3.768±1.69 0.832±0.14 7.146±4.09 0.400±0.23 0.231±0.07 5.553±3.36 1.890±1.26 0.633±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0002 VISTA 12:28516804-29118905

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005537 IEA mannose binding
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0005581 IEA collagen trimer
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0032502 ISS developmental process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236693 COLEC11-001 protein_coding Homo_sapiens 0 728
ENST00000349077 COLEC11-002 protein_coding Homo_sapiens 0 970
ENST00000382062 COLEC11-201 protein_coding Homo_sapiens 0 630
ENST00000402794 COLEC11-005 protein_coding Homo_sapiens 0 730
ENST00000402922 COLEC11-008 protein_coding Homo_sapiens 0 630
ENST00000403096 COLEC11-007 protein_coding Homo_sapiens 0 824
ENST00000404205 COLEC11-006 protein_coding Homo_sapiens 0 625
ENST00000416132 COLEC11-011 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000418971 COLEC11-202 protein_coding Homo_sapiens 0 957
ENST00000438814 COLEC11-009 protein_coding Homo_sapiens 0 394
ENST00000460971 COLEC11-004 processed_transcript Homo_sapiens 0 628
ENST00000487365 COLEC11-003 processed_transcript Homo_sapiens 0 734

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