C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: necdin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038775 Ndn-201 ENSMUSG00000033585 10090 + 7:62348277-62349928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038775 20.463±1.77 64.472±5.59 28.498±2.05 284.747±154.77 19.575±6.62 8.069±0.82 4.539±0.88 2.750±0.27 2.826±2.62 11.472±0.54 2.364±0.20 22.152±7.48 15.332±5.65 1.156±0.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 TAS regulation of cell growth
GO:0001764 IMP neuron migration
GO:0003016 IMP respiratory system process
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IGI regulation of transcription, DNA-templated
GO:0006874 TAS cellular calcium ion homeostasis
GO:0007409 IMP axonogenesis
GO:0007413 IMP axonal fasciculation
GO:0007417 IMP central nervous system development
GO:0007585 IMP respiratory gaseous exchange
GO:0008347 IMP glial cell migration
GO:0009791 IMP post-embryonic development
GO:0019233 IMP sensory perception of pain
GO:0042995 IDA cell projection
GO:0043015 IDA gamma-tubulin binding
GO:0048011 IMP neurotrophin TRK receptor signaling pathway
GO:0048666 IMP neuron development
GO:0048675 IMP axon extension
GO:0048871 IMP multicellular organismal homeostasis
GO:0071514 IMP genetic imprinting

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331837 NDN-001 protein_coding Homo_sapiens 0 1249
ENST00000547243 RP11-560G2.2-001 processed_pseudogene Homo_sapiens 0 335

Loading