C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039517 Syde2-201 ENSMUSG00000036863 10090 + 3:145987870-146021720 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039517
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039517 2.368±0.10 2.333±0.72 3.994±0.17 0.601±0.06 1.767±0.37 2.037±0.80 3.054±0.51 2.539±0.61 0.860±0.17 3.362±0.34 0.141±0.02 2.344±0.97 4.860±1.18 0.355±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QR CIL_0007QR_0002 VISTA 3:145664099-146264929

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000234668 SYDE2-001 retained_intron Homo_sapiens 0 1064
ENST00000341460 SYDE2-002 protein_coding Homo_sapiens 0 2302

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