C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exportin, tRNA (nuclear export receptor for tRNAs)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039810 Xpot-201 ENSMUSG00000034667 10090 - 10:121587380-121626316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039810
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039810 7.657±1.77 9.706±4.27 5.693±0.40 6.386±1.37 6.114±2.06 5.189±0.83 4.020±1.49 8.820±2.00 7.199±2.72 11.330±3.34 1.873±0.23 10.177±3.38 8.178±5.20 3.734±1.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006409 IEA tRNA export from nucleus
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332707 XPOT-001 protein_coding Homo_sapiens 0 3469
ENST00000400935 XPOT-004 protein_coding Homo_sapiens 0 708
ENST00000443317 XPOTP1-001 processed_pseudogene Homo_sapiens 0 1426
ENST00000449426 RP11-700P18.1-001 processed_pseudogene Homo_sapiens 0 2848
ENST00000538086 XPOT-006 nonsense_mediated_decay Homo_sapiens 0 682
ENST00000540203 XPOT-003 protein_coding Homo_sapiens 0 267
ENST00000541842 XPOT-007 retained_intron Homo_sapiens 0 344
ENST00000542958 XPOT-005 retained_intron Homo_sapiens 0 828

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