C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fermitin family homolog 3 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040772 Fermt3-201 ENSMUSG00000024965 10090 - 19:6998958-7019469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040772 6.715±0.74 4.292±0.96 8.472±0.74 1.883±0.46 22.130±9.69 4.547±1.35 2.364±0.87 2.444±0.53 32.761±26.70 13.044±3.41 1.401±0.77 3.840±1.33 3.142±1.89 0.541±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O8 CIL_0005O8_0002 CGP 19:6998958-7040026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002102 IDA podosome
GO:0005178 IDA integrin binding
GO:0005515 IPI protein binding
GO:0007159 IMP leukocyte cell-cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0033622 IMP integrin activation
GO:0033632 IMP regulation of cell-cell adhesion mediated by integrin
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0042995 IEA cell projection
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IMP platelet aggregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279227 FERMT3-001 protein_coding Homo_sapiens 0 2230
ENST00000345728 FERMT3-002 protein_coding Homo_sapiens 0 2279
ENST00000540554 FERMT3-003 retained_intron Homo_sapiens 0 246
ENST00000540957 FERMT3-005 retained_intron Homo_sapiens 0 460
ENST00000541252 FERMT3-008 protein_coding Homo_sapiens 0 693
ENST00000541326 FERMT3-006 retained_intron Homo_sapiens 0 654
ENST00000544997 FERMT3-009 protein_coding Homo_sapiens 0 996
ENST00000545896 FERMT3-004 protein_coding Homo_sapiens 0 414
ENST00000546255 FERMT3-007 retained_intron Homo_sapiens 7e-37 158

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