C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium and integrin binding family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041901 Cib2-001 ENSMUSG00000037493 10090 - 9:54544794-54560218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041901 44.303±25.63 13.988±3.09 4.000±0.63 11.202±1.06 34.971±9.01 1.768±0.46 2.217±0.80 4.478±0.48 1.796±0.98 4.967±0.83 91.619±17.90 4.703±1.13 2.493±1.10 2.263±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YR CIL_0007YR_0002 VISTA 9:54035032-54637557
CIL_0001UM CIL_0001UM_0002 CGP 9:54544794-54604661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001917 IDA photoreceptor inner segment
GO:0005178 IPI integrin binding
GO:0005509 IDA calcium ion binding
GO:0005515 IEA protein binding
GO:0005927 IDA muscle tendon junction
GO:0031594 IDA neuromuscular junction
GO:0032403 IDA protein complex binding
GO:0042383 IDA sarcolemma
GO:0045494 IDA photoreceptor cell maintenance
GO:0055074 IMP calcium ion homeostasis
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258930 CIB2-001 protein_coding Homo_sapiens 0 813
ENST00000539011 CIB2-002 protein_coding Homo_sapiens 0 660
ENST00000557818 CIB2-004 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000557846 CIB2-006 protein_coding Homo_sapiens 0 516
ENST00000557917 CIB2-007 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000559054 CIB2-003 protein_coding Homo_sapiens 2e-36 156
ENST00000559645 CIB2-009 protein_coding Homo_sapiens 0 276
ENST00000560618 CIB2-005 protein_coding Homo_sapiens 0 571
ENST00000561190 CIB2-008 protein_coding Homo_sapiens 0 492

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