C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serpine1 mRNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042990 Serbp1-201 ENSMUSG00000036371 10090 + 6:67266979-67289302 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042990 6.613±3.14 23.535±12.70 20.500±0.14 16.103±0.24 8.043±4.78 11.655±5.22 6.165±1.53 6.787±1.38 13.667±7.61 15.111±6.16 12.643±3.01 16.224±6.89 16.471±11.59 10.561±5.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QS CIL_0004QS_0003 CGP 6:67266979-67376188

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0016020 IEA membrane
GO:0042981 IEA regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361219 SERBP1-005 protein_coding Homo_sapiens 0 1554
ENST00000370990 SERBP1-006 protein_coding Homo_sapiens 0 2314
ENST00000370994 SERBP1-001 protein_coding Homo_sapiens 0 1592
ENST00000370995 SERBP1-002 protein_coding Homo_sapiens 0 2863
ENST00000396021 SERBP1P1-001 processed_pseudogene Homo_sapiens 0 800
ENST00000459980 SERBP1P3-001 processed_pseudogene Homo_sapiens 0 553
ENST00000462814 SERBP1-004 processed_transcript Homo_sapiens 0 355
ENST00000484880 SERBP1-007 processed_transcript Homo_sapiens 0 350
ENST00000490406 SERBP1-003 processed_transcript Homo_sapiens 0 514
ENST00000493607 SERBP1-008 processed_transcript Homo_sapiens 0 747
ENST00000507707 SERBP1P6-001 processed_pseudogene Homo_sapiens 0 1014
ENST00000510079 SERBP1P5-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000604782 RP11-1003J3.1-001 processed_pseudogene Homo_sapiens 0 388

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