C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ral guanine nucleotide dissociation stimulator-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045726 Rgl3-201 ENSMUSG00000040146 10090 - 9:21971527-21989453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045726 5.059±2.23 32.494±4.83 5.889±1.29 0.475±0.03 3.992±0.56 3.876±1.04 2.535±0.61 17.606±4.03 5.354±4.54 3.858±0.68 0.315±0.11 5.487±2.29 1.691±0.97 0.421±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RI CIL_0003RI_0002 CGP 9:21958899-21989453
CIL_0004G4 CIL_0004G4_0002 CGP 9:21971527-22002634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008321 IDA Ral guanyl-nucleotide exchange factor activity
GO:0017016 IDA Ras GTPase binding
GO:0032852 IDA positive regulation of Ral GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380456 RGL3-001 protein_coding Homo_sapiens 0 1759
ENST00000393423 RGL3-002 protein_coding Homo_sapiens 0 1685
ENST00000453604 RGL3-004 retained_intron Homo_sapiens 0 459
ENST00000562663 RGL3-006 nonsense_mediated_decay Homo_sapiens 0 1583
ENST00000563726 RGL3-007 nonsense_mediated_decay Homo_sapiens 0 1177
ENST00000565895 RGL3-012 retained_intron Homo_sapiens 0 370
ENST00000566153 RGL3-008 retained_intron Homo_sapiens 0 719
ENST00000566919 RGL3-013 retained_intron Homo_sapiens 0 237
ENST00000568628 RGL3-014 processed_transcript Homo_sapiens 0 231
ENST00000589032 RGL3-018 nonsense_mediated_decay Homo_sapiens 0 274

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