C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spondin 2, extracellular matrix protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046186 Spon2-201 ENSMUSG00000037379 10090 - 5:33213518-33218238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046186 43.784±37.59 1.229±0.16 11.091±3.72 0.463±0.42 23.501±8.98 31.965±16.04 5.131±1.16 0.671±0.20 3.068±2.41 9.674±4.70 0.330±0.16 14.704±7.21 4.528±5.39 0.197±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LO CIL_0006LO_0002 CGP 5:33213518-33275004

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001530 IDA lipopolysaccharide binding
GO:0002448 IMP mast cell mediated immunity
GO:0003823 IDA antigen binding
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0007155 IEA cell adhesion
GO:0008228 IDA opsonization
GO:0031012 IDA extracellular matrix
GO:0032496 IMP response to lipopolysaccharide
GO:0032755 IDA positive regulation of interleukin-6 production
GO:0032760 IDA positive regulation of tumor necrosis factor production
GO:0042742 IMP defense response to bacterium
GO:0043152 IDA induction of bacterial agglutination
GO:0045087 IMP innate immune response
GO:0046872 IEA metal ion binding
GO:0050832 IMP defense response to fungus
GO:0051607 IMP defense response to virus
GO:0060907 IDA positive regulation of macrophage cytokine production
GO:0070062 IEA extracellular vesicular exosome
GO:0071222 IDA cellular response to lipopolysaccharide

Homologs

No Homologs available.

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