C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 20, retrogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046331 Wdr20rt-201 ENSMUSG00000035560 10090 + 12:65225517-65228454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungPlacentaTestisENSMUST00000046331
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Placenta Testis
ENSMUST00000046331 0.087±0.00 0.028±0.01 0.035±0.01 0.028±0.00 0.025±0.01 0.024±0.02 0.023±0.00 0.036±0.00 35.853±5.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299135 WDR20-011 protein_coding Homo_sapiens 0 1696
ENST00000322340 WDR20-010 protein_coding Homo_sapiens 0 689
ENST00000335263 WDR20-003 protein_coding Homo_sapiens 0 2340
ENST00000342702 WDR20-001 protein_coding Homo_sapiens 0 2357
ENST00000424963 WDR20-201 protein_coding Homo_sapiens 0 1644
ENST00000454394 WDR20-019 protein_coding Homo_sapiens 0 1696
ENST00000555879 WDR20-007 nonsense_mediated_decay Homo_sapiens 0 1351
ENST00000555973 WDR20-006 processed_transcript Homo_sapiens 0 588
ENST00000556094 WDR20-009 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000556511 WDR20-004 protein_coding Homo_sapiens 0 1696
ENST00000556807 WDR20-002 protein_coding Homo_sapiens 0 1644
ENST00000557186 WDR20-008 processed_transcript Homo_sapiens 0 544
ENST00000557485 WDR20-005 processed_transcript Homo_sapiens 0 377
ENST00000558135 WDR20-014 processed_transcript Homo_sapiens 0 736
ENST00000558448 WDR20-015 processed_transcript Homo_sapiens 0 416
ENST00000558567 WDR20-016 protein_coding Homo_sapiens 0 669
ENST00000558854 WDR20-013 protein_coding Homo_sapiens 0 656
ENST00000559478 WDR20-018 protein_coding Homo_sapiens 0 254
ENST00000559708 WDR20-012 processed_transcript Homo_sapiens 0 593
ENST00000561154 WDR20-017 processed_transcript Homo_sapiens 0 401

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