C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dimethylglycine dehydrogenase precursor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048001 Dmgdh-001 ENSMUSG00000042102 10090 + 13:93674433-93752831 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048001
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048001 0.028±0.02 0.169±0.08 0.809±0.03 0.091±0.07 0.321±0.03 0.100±0.05 0.021±0.00 21.730±1.15 61.682±47.44 0.035±0.01 0.019±0.00 0.149±0.12 2.158±2.21 0.058±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XP CIL_0002XP_0002 CGP 13:93655720-93752831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004047 IEA aminomethyltransferase activity
GO:0005739 IDA mitochondrion
GO:0006544 IEA glycine metabolic process
GO:0006546 IEA glycine catabolic process
GO:0006579 IEA amino-acid betaine catabolic process
GO:0032259 IEA methylation
GO:0044822 IEA poly(A) RNA binding
GO:0047865 IEA dimethylglycine dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255189 DMGDH-001 protein_coding Homo_sapiens 0 2712
ENST00000517853 DMGDH-003 nonsense_mediated_decay Homo_sapiens 0 1122
ENST00000518477 DMGDH-002 nonsense_mediated_decay Homo_sapiens 0 1633
ENST00000521052 DMGDH-005 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000523732 DMGDH-004 protein_coding Homo_sapiens 0 1917

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