C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibrinogen beta chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048246 Fgb-201 ENSMUSG00000033831 10090 - 3:83042247-83049803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048246 0.221±0.15 0.326±0.12 0.123±0.11 0.094±0.03 4.308±1.19 0.115±0.08 0.314±0.21 1.918±0.23 1222.268±669.19 0.339±0.08 0.052±0.02 1.078±1.32 130.133±164.27 0.147±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0002 VISTA 3:82670874-83271669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005938 IDA cell cortex
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0009897 IEA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0030674 IEA protein binding, bridging
GO:0031091 IEA platelet alpha granule
GO:0031982 IEA vesicle
GO:0034116 IEA positive regulation of heterotypic cell-cell adhesion
GO:0043623 IEA cellular protein complex assembly
GO:0044320 IEA cellular response to leptin stimulus
GO:0045907 IEA positive regulation of vasoconstriction
GO:0045921 IEA positive regulation of exocytosis
GO:0050714 IEA positive regulation of protein secretion
GO:0050839 IEA cell adhesion molecule binding
GO:0051087 IEA chaperone binding
GO:0051592 IEA response to calcium ion
GO:0070062 IEA extracellular vesicular exosome
GO:0070374 IEA positive regulation of ERK1 and ERK2 cascade
GO:0070527 IEA platelet aggregation
GO:0071347 IEA cellular response to interleukin-1
GO:0072562 IEA blood microparticle
GO:0090277 IEA positive regulation of peptide hormone secretion
GO:1902042 IEA negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000352 IEA negative regulation of endothelial cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302068 FGB-001 protein_coding Homo_sapiens 0 1441
ENST00000502545 FGB-011 processed_transcript Homo_sapiens 0 357
ENST00000509493 FGB-010 protein_coding Homo_sapiens 0 1096

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