C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 8a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048915 Rbm8a-201 ENSMUSG00000038374 10090 + 3:96629928-96633779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048915 2.685±0.78 1.625±0.34 8.621±1.89 14.850±7.07 2.065±0.34 2.357±0.41 2.100±0.27 2.896±0.55 5.642±3.82 4.150±0.68 5.025±0.76 4.795±4.04 14.294±5.95 3.089±0.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369307 RBM8A-002 protein_coding Homo_sapiens 0 715
ENST00000484825 RBM8A-004 retained_intron Homo_sapiens 0 200
ENST00000498565 C14orf39-002 nonsense_mediated_decay Homo_sapiens 3e-30 135
ENST00000498663 RBM8A-003 retained_intron Homo_sapiens 0 202
ENST00000555532 RBM8B-001 processed_pseudogene Homo_sapiens 0 649
ENST00000583313 RBM8A-001 protein_coding Homo_sapiens 0 736

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