C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating RANGAP domain-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049618 Garnl3-002 ENSMUSG00000038860 10090 - 2:32986374-33086366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaTestisENSMUST00000049618
Transcript ID Brain Kidney Ovary Placenta Testis
ENSMUST00000049618 1.787±0.00 0.163±0.04 0.688±0.33 0.089±0.00 0.380±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YA CIL_0008YA_0002 VISTA 2:32608279-33209524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005083 IEA small GTPase regulator activity
GO:0005096 IEA GTPase activator activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373386 GARNL3-001 nonsense_mediated_decay Homo_sapiens 0 3049
ENST00000373387 GARNL3-003 protein_coding Homo_sapiens 0 3886
ENST00000425970 GARNL3-012 protein_coding Homo_sapiens 0 649
ENST00000429629 GARNL3-011 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000435213 GARNL3-201 protein_coding Homo_sapiens 0 3795
ENST00000439286 GARNL3-005 protein_coding Homo_sapiens 0 881
ENST00000441134 GARNL3-018 nonsense_mediated_decay Homo_sapiens 0 560
ENST00000444677 GARNL3-016 protein_coding Homo_sapiens 0 366
ENST00000446764 GARNL3-009 protein_coding Homo_sapiens 0 257
ENST00000460176 GARNL3-022 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000463005 GARNL3-010 retained_intron Homo_sapiens 0 440
ENST00000464616 GARNL3-015 processed_transcript Homo_sapiens 0 566
ENST00000478702 GARNL3-019 processed_transcript Homo_sapiens 0 652
ENST00000481242 GARNL3-013 retained_intron Homo_sapiens 0 1194
ENST00000481875 GARNL3-014 retained_intron Homo_sapiens 0 390
ENST00000487565 GARNL3-021 processed_transcript Homo_sapiens 0 257
ENST00000495172 GARNL3-007 retained_intron Homo_sapiens 0 893
ENST00000496711 GARNL3-004 processed_transcript Homo_sapiens 0 1194
ENST00000497703 GARNL3-008 retained_intron Homo_sapiens 0 298
ENST00000498801 GARNL3-020 processed_transcript Homo_sapiens 0 634

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