C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single stranded DNA binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049908 Ssbp4-201 ENSMUSG00000070003 10090 - 8:70597491-70608314 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049908
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049908 29.361±8.11 73.713±14.98 19.640±4.60 53.047±3.03 40.116±18.56 45.495±10.62 10.481±1.84 21.754±3.49 9.861±8.47 49.976±11.53 2.603±0.56 47.115±17.37 13.576±10.65 7.337±2.09

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003697 IEA single-stranded DNA binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270061 SSBP4-002 protein_coding Homo_sapiens 0 846
ENST00000348495 SSBP4-001 protein_coding Homo_sapiens 0 1149
ENST00000589764 RP11-815J4.7-001 processed_pseudogene Homo_sapiens 0 320
ENST00000593641 SSBP4-005 protein_coding Homo_sapiens 0 580
ENST00000597724 SSBP4-004 protein_coding Homo_sapiens 0 505
ENST00000598159 SSBP4-016 processed_transcript Homo_sapiens 0 355
ENST00000599699 SSBP4-013 protein_coding Homo_sapiens 0 252
ENST00000600628 SSBP4-008 processed_transcript Homo_sapiens 0 267
ENST00000601357 SSBP4-006 protein_coding Homo_sapiens 0 359
ENST00000601444 SSBP4-015 retained_intron Homo_sapiens 0 464
ENST00000601614 SSBP4-007 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000602088 SSBP4-009 protein_coding Homo_sapiens 0 532

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