C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2410016O06 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053744 2410016O06Rik-201 ENSMUSG00000046791 10090 + 12:83950608-83952953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053744
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053744 2.850±1.26 7.340±1.25 3.688±0.79 4.374±1.48 4.127±1.09 4.304±0.33 1.243±0.29 2.322±0.26 3.682±2.13 6.653±1.18 1.659±0.21 7.049±1.27 4.848±2.16 1.290±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_00089E CIL_00089E_0002 VISTA 12:83875691-84476743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IMP iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006338 TAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0016706 IMP oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 IDA histone demethylase activity (H3-K4 specific)
GO:0034720 IDA histone H3-K4 demethylation
GO:0042254 TAS ribosome biogenesis
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0051864 IDA histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0070544 IDA histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304061 C14orf169-003 protein_coding Homo_sapiens 0 1513

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