C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LEM domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055117 Lemd2-201 ENSMUSG00000044857 10090 - 17:27189601-27204438 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055117 18.812±2.75 36.134±8.42 17.601±3.56 18.908±5.36 19.780±9.34 37.553±6.42 10.264±1.31 15.149±1.66 8.911±3.03 21.974±3.97 8.644±2.64 37.825±12.39 15.492±3.22 8.273±2.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000250 CIL_000250_0002 CGP 17:27143969-27204438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016020 IEA membrane
GO:0031965 IDA nuclear membrane
GO:0035914 IMP skeletal muscle cell differentiation
GO:0043409 IMP negative regulation of MAPK cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293760 LEMD2-001 protein_coding Homo_sapiens 0 1328
ENST00000421671 LEMD2-003 nonsense_mediated_decay Homo_sapiens 0 789
ENST00000506578 LEMD2-013 protein_coding Homo_sapiens 0 283
ENST00000508327 LEMD2-004 protein_coding Homo_sapiens 0 789
ENST00000511171 LEMD2-008 retained_intron Homo_sapiens 0 523
ENST00000513701 LEMD2-005 protein_coding Homo_sapiens 0 318
ENST00000614475 LEMD2-201 protein_coding Homo_sapiens 0 1306

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