C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: limb region 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055195 Lmbr1-201 ENSMUSG00000010721 10090 - 5:29229814-29378390 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055195
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055195 2.661±0.22 2.515±0.79 4.985±0.37 4.437±1.99 2.389±0.51 1.686±0.74 2.375±0.51 1.775±0.48 0.714±0.18 2.939±0.14 1.964±0.45 2.226±0.41 2.546±0.89 3.278±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000455 CIL_000455_0002 CGP 5:29195992-29378390
CIL_00025V CIL_00025V_0002 CGP 5:29229814-29453506

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0042733 IMP embryonic digit morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353442 LMBR1-001 protein_coding Homo_sapiens 0 1951
ENST00000359422 LMBR1-201 protein_coding Homo_sapiens 0 1628
ENST00000414218 LMBR1-010 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000415428 LMBR1-004 protein_coding Homo_sapiens 0 955
ENST00000430278 LMBR1-008 processed_transcript Homo_sapiens 0 276
ENST00000433968 LMBR1-011 processed_transcript Homo_sapiens 0 276
ENST00000434278 LMBR1-009 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000434453 LMBR1-002 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000434503 LMBR1-014 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000444719 LMBR1-013 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000448926 LMBR1-005 nonsense_mediated_decay Homo_sapiens 0 968
ENST00000454132 LMBR1-003 nonsense_mediated_decay Homo_sapiens 0 1291
ENST00000461469 LMBR1-007 processed_transcript Homo_sapiens 0 584
ENST00000461603 LMBR1-015 processed_transcript Homo_sapiens 0 734
ENST00000477983 LMBR1-016 retained_intron Homo_sapiens 0 340
ENST00000485985 LMBR1-012 retained_intron Homo_sapiens 0 324
ENST00000486837 LMBR1-017 retained_intron Homo_sapiens 0 433
ENST00000498034 LMBR1-006 processed_transcript Homo_sapiens 0 241

Loading