C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stratifin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057311 Sfn-001 ENSMUSG00000047281 10090 - 4:133600556-133602168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057311 2.517±0.75 0.889±0.21 124.509±34.43 2.602±1.55 13.259±4.74 82.198±16.70 0.624±0.17 2.836±0.16 0.420±0.18 21.964±16.64 1.225±0.78 4.495±1.05 55.321±25.38 0.404±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IDA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0001836 IEA release of cytochrome c from mitochondria
GO:0003334 IGI keratinocyte development
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0008630 IEA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010482 IMP regulation of epidermal cell division
GO:0010839 IGI negative regulation of keratinocyte proliferation
GO:0019901 IDA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0030216 IMP keratinocyte differentiation
GO:0030307 IDA positive regulation of cell growth
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031424 IMP keratinization
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043588 IMP skin development
GO:0045606 IMP positive regulation of epidermal cell differentiation
GO:0046827 IDA positive regulation of protein export from nucleus
GO:0051219 IPI phosphoprotein binding
GO:0051726 IDA regulation of cell cycle
GO:0061436 IMP establishment of skin barrier
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339276 SFN-001 protein_coding Homo_sapiens 0 1011

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