C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 58, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059468 Fam58b-001 ENSMUSG00000049489 10090 - 11:78750506-78751729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059468
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059468 22.469±5.26 67.326±5.63 17.012±2.85 6.526±2.25 22.940±2.81 16.738±1.54 18.363±0.23 25.048±1.16 13.088±4.36 20.970±1.44 7.652±0.90 23.474±7.47 9.909±4.46 8.022±2.37

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019901 IEA protein kinase binding
GO:0030295 IDA protein kinase activator activity
GO:0043410 IGI positive regulation of MAPK cascade
GO:0045860 IDA positive regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054659 fam58a-001 protein_coding Danio_rerio 2e-21 108
ENST00000428076 FAM58DP-001 processed_pseudogene Homo_sapiens 0 625
ENST00000429336 FAM58A-005 protein_coding Homo_sapiens 2e-37 159
ENST00000435741 FAM58CP-001 processed_pseudogene Homo_sapiens 0 638
ENST00000439056 FAM58BP-001 processed_pseudogene Homo_sapiens 0 704
ENST00000521069 RP11-779O18.2-001 processed_pseudogene Homo_sapiens 0 717
ENST00000576892 FAM58A-006 protein_coding Homo_sapiens 0 804
ENST00000614851 FAM58A-004 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000621629 FAM58A-010 nonsense_mediated_decay Homo_sapiens 0 774

Loading