C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras and Rab interactor-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059857 Rinl-201 ENSMUSG00000051735 10090 + 7:28788969-28798963 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059857 0.929±0.58 1.359±0.10 0.646±0.10 0.259±0.06 3.020±1.83 0.826±0.37 0.583±0.11 0.950±0.44 2.132±1.09 1.799±1.34 0.217±0.03 0.920±0.21 10.690±5.62 0.246±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UY CIL_0006UY_0002 CGP 7:28766735-28798963

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0005085 IDA guanyl-nucleotide exchange factor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI protein binding
GO:0006897 IDA endocytosis
GO:0015031 IEA protein transport
GO:0015629 IDA actin cytoskeleton
GO:0031410 IEA cytoplasmic vesicle
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000589111 RINL-002 retained_intron Homo_sapiens 5e-24 117
ENST00000591812 RINL-001 protein_coding Homo_sapiens 0 435
ENST00000596919 RINL-013 retained_intron Homo_sapiens 3e-40 169
ENST00000598904 RINL-012 protein_coding Homo_sapiens 0 407

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