C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061772 Rbm15-201 ENSMUSG00000048109 10090 - 3:107326110-107333289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061772 3.145±1.20 3.012±1.26 1.260±0.03 2.871±0.28 4.837±1.42 3.866±0.36 1.324±0.71 2.417±0.33 3.655±1.86 2.515±0.17 1.036±0.24 4.761±2.29 7.431±3.32 4.319±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075R CIL_00075R_0002 CGP 3:107291230-107333289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0001569 IMP patterning of blood vessels
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007221 IDA positive regulation of transcription of Notch receptor target
GO:0044822 IEA poly(A) RNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0048536 IMP spleen development
GO:0060412 IMP ventricular septum morphogenesis
GO:0060674 IMP placenta blood vessel development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369784 RBM15-001 protein_coding Homo_sapiens 0 3938
ENST00000487146 RBM15-002 protein_coding Homo_sapiens 0 4106
ENST00000514947 CTB-88F18.2-001 processed_pseudogene Homo_sapiens 0 1463
ENST00000602849 RBM15-003 protein_coding Homo_sapiens 0 3788
ENST00000617047 RBM15-004 protein_coding Homo_sapiens 0 3627
ENST00000618772 RBM15-201 protein_coding Homo_sapiens 0 3788

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