C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064433 Tmod2-201 ENSMUSG00000032186 10090 - 9:75565621-75611325 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000064433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000064433 2.091±1.74 0.834±0.53 2.315±0.16 22.158±2.40 1.747±0.63 1.044±0.19 0.368±0.00 0.134±0.06 0.031±0.01 2.255±0.49 0.300±0.12 0.954±0.38 0.108±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YJ CIL_0004YJ_0002 CGP 9:75565621-75637773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0007270 IMP neuron-neuron synaptic transmission
GO:0007611 IMP learning or memory
GO:0045745 IMP positive regulation of G-protein coupled receptor protein signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249700 TMOD2-001 protein_coding Homo_sapiens 0 1583
ENST00000435126 TMOD2-004 protein_coding Homo_sapiens 0 776
ENST00000539962 TMOD2-002 protein_coding Homo_sapiens 0 1347
ENST00000560576 TMOD2-003 retained_intron Homo_sapiens 0 206
ENST00000561300 TMOD2-005 retained_intron Homo_sapiens 0 302
ENST00000561407 TMOD2-006 nonsense_mediated_decay Homo_sapiens 0 448

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