C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger SWIM-type containing 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072916 Zswim7-001 ENSMUSG00000014243 10090 - 11:62267224-62281375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072916 9.734±0.74 8.010±0.33 10.090±1.56 5.005±2.47 10.436±4.84 4.094±0.82 10.592±1.54 17.883±1.33 7.830±1.71 3.514±0.92 24.794±1.79 10.274±1.92 16.254±9.74 42.296±11.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XH CIL_0002XH_0002 CGP 11:62248984-62281375
CIL_0000H6 CIL_0000H6_0002 CGP 11:62267224-62328451

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0050821 IEA protein stabilization
GO:0097196 IEA Shu complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399277 ZSWIM7-001 protein_coding Homo_sapiens 0 375
ENST00000399280 ZSWIM7-002 processed_transcript Homo_sapiens 0 322
ENST00000460252 ZSWIM7-008 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000460315 ZSWIM7-009 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000472495 ZSWIM7-003 protein_coding Homo_sapiens 0 374
ENST00000474716 ZSWIM7-010 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000475498 ZSWIM7-012 processed_transcript Homo_sapiens 0 322
ENST00000476496 ZSWIM7-014 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000486655 ZSWIM7-011 protein_coding Homo_sapiens 0 200
ENST00000486706 ZSWIM7-007 nonsense_mediated_decay Homo_sapiens 4e-36 156
ENST00000490395 ZSWIM7-004 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000491631 ZSWIM7-005 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000495825 ZSWIM7-013 processed_transcript Homo_sapiens 0 320
ENST00000497719 ZSWIM7-006 processed_transcript Homo_sapiens 0 320
ENST00000579955 ZSWIM7-020 nonsense_mediated_decay Homo_sapiens 2e-33 147
ENST00000584519 ZSWIM7-021 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000585208 ZSWIM7-016 nonsense_mediated_decay Homo_sapiens 2e-30 137

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