C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 26, subfamily c, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073391 Cyp26c1-201 ENSMUSG00000062432 10090 + 19:37685581-37693398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073391
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073391 0.044±0.02 0.014±0.00 0.035±0.02 0.038±0.01 0.029±0.01 0.037±0.02 0.065±0.04 0.065±0.04 0.080±0.03 0.058±0.01 0.097±0.08 0.080±0.04 0.080±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VX CIL_0007VX_0002 VISTA 19:37192022-37797349
CIL_0000ZW CIL_0000ZW_0002 CGP 19:37550418-37693398
CIL_0000ZX CIL_0000ZX_0002 CGP 19:37685581-37701528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001972 IEA retinoic acid binding
GO:0005506 IEA iron ion binding
GO:0007417 IGI central nervous system development
GO:0008401 IEA retinoic acid 4-hydroxylase activity
GO:0009952 IGI anterior/posterior pattern specification
GO:0014032 IGI neural crest cell development
GO:0020037 IEA heme binding
GO:0034653 IEA retinoic acid catabolic process
GO:0048284 IGI organelle fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285949 CYP26C1-001 protein_coding Homo_sapiens 0 1513
ENST00000624358 CYP26C1-002 nonsense_mediated_decay Homo_sapiens 0 747

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