C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine zipper-EF-hand containing transmembrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079160 Letm2-201 ENSMUSG00000037363 10090 - 8:25578492-25597487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079160 0.804±0.39 0.472±0.11 2.567±0.00 1.644±0.19 0.784±0.47 0.268±0.06 0.902±0.31 0.512±0.33 0.567±0.41 0.393±0.09 1.166±0.66 0.835±0.26 1.695±0.90 36.992±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D9 CIL_0008D9_0002 VISTA 8:25042689-25644335
CIL_0008H7 CIL_0008H7_0002 VISTA 8:25139932-25741457
CIL_0008SM CIL_0008SM_0002 VISTA 8:25140188-25742103
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005743 IEA mitochondrial inner membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297720 LETM2-001 protein_coding Homo_sapiens 0 638
ENST00000379957 LETM2-013 protein_coding Homo_sapiens 0 1070
ENST00000518121 LETM2-006 retained_intron Homo_sapiens 0 702
ENST00000518883 LETM2-005 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000519476 LETM2-002 protein_coding Homo_sapiens 0 198
ENST00000523268 LETM2-004 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000523983 LETM2-003 protein_coding Homo_sapiens 0 987
ENST00000524874 LETM2-015 protein_coding Homo_sapiens 0 638
ENST00000527175 LETM2-009 protein_coding Homo_sapiens 1e-24 117
ENST00000527710 LETM2-007 protein_coding Homo_sapiens 0 638
ENST00000528827 LETM2-011 processed_transcript Homo_sapiens 0 453
ENST00000530448 LETM2-010 retained_intron Homo_sapiens 5.99756e-43 178

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