C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079590 Myo1a-201 ENSMUSG00000025401 10090 + 10:127705170-127720887 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079590 0.076±0.05 1.288±1.35 0.048±0.00 0.524±0.23 0.101±0.05 22.508±8.70 0.039±0.01 0.032±0.02 0.056±0.05 0.166±0.15 0.044±0.02 0.682±0.37 0.102±0.04 5.152±4.60

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005737 ISS cytoplasm
GO:0005902 ISS microvillus
GO:0005903 ISS brush border
GO:0007605 ISS sensory perception of sound
GO:0008152 IEA metabolic process
GO:0009925 IDA basal plasma membrane
GO:0016323 ISS basolateral plasma membrane
GO:0016324 IDA apical plasma membrane
GO:0016328 ISS lateral plasma membrane
GO:0016459 IEA myosin complex
GO:0030030 IMP cell projection organization
GO:0030033 IMP microvillus assembly
GO:0030864 ISS cortical actin cytoskeleton
GO:0031941 ISS filamentous actin
GO:0051648 ISS vesicle localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300119 MYO1A-001 protein_coding Homo_sapiens 0 3400
ENST00000442789 MYO1A-004 protein_coding Homo_sapiens 0 3400
ENST00000476795 MYO1A-006 processed_transcript Homo_sapiens 0 538
ENST00000477864 MYO1A-008 processed_transcript Homo_sapiens 0 536
ENST00000487083 MYO1A-007 retained_intron Homo_sapiens 0 207
ENST00000554234 MYO1A-009 nonsense_mediated_decay Homo_sapiens 0 2806

Loading