C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lipoma HMGIC fusion partner-like 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080780 Lhfpl5-001 ENSMUSG00000062252 10090 + 17:28575718-28583593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000080780
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000080780 0.022±0.00 4.215±0.81 0.069±0.01 2.127±0.06 0.646±0.14 0.082±0.01 0.126±0.05 0.019±0.01 0.027±0.00 0.076±0.00 0.005±0.00 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002O1 CIL_0002O1_0002 CGP 17:28558210-28583593
CIL_0002O2 CIL_0002O2_0002 CGP 17:28575718-28622521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006811 IEA ion transport
GO:0007605 IMP sensory perception of sound
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0032421 IDA stereocilium bundle
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0060088 IMP auditory receptor cell stereocilium organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360215 LHFPL5-002 protein_coding Homo_sapiens 0 850
ENST00000496656 LHFPL5-001 processed_transcript Homo_sapiens 0 340

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