C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088169 Rtn3-203 ENSMUSG00000024758 10090 - 19:7427028-7483219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastLiverOvaryPlacentaTestisENSMUST00000088169
Transcript ID Adipose Adrenal Breast Liver Ovary Placenta Testis
ENSMUST00000088169 38.422±4.46 42.180±0.00 53.020±6.29 12.827±0.00 50.957±4.73 23.824±8.44 11.698±5.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z1 CIL_0001Z1_0002 CGP 19:7417625-7483289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338850 RTN3-011 processed_transcript Homo_sapiens 0 350
ENST00000339997 RTN3-001 protein_coding Homo_sapiens 0 983
ENST00000341307 RTN3-007 protein_coding Homo_sapiens 0 632
ENST00000354497 RTN3-006 protein_coding Homo_sapiens 0 350
ENST00000356000 RTN3-201 protein_coding Homo_sapiens 0 1341
ENST00000377819 RTN3-002 protein_coding Homo_sapiens 0 983
ENST00000536011 RTN3-004 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000536295 RTN3P1-001 processed_pseudogene Homo_sapiens 0 721
ENST00000537981 RTN3-005 protein_coding Homo_sapiens 0 981
ENST00000540798 RTN3-003 protein_coding Homo_sapiens 0 970
ENST00000542238 RTN3-013 protein_coding Homo_sapiens 0 636
ENST00000543123 RTN3-012 retained_intron Homo_sapiens 0 311
ENST00000545432 RTN3-010 protein_coding Homo_sapiens 0 363
ENST00000547375 RP11-18O15.1-001 processed_pseudogene Homo_sapiens 3e-30 135

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