C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088223 Trpt1-201 ENSMUSG00000047656 10090 + 19:6996131-6999044 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088223 7.885±2.04 8.325±0.43 11.108±1.97 5.572±1.32 7.284±1.37 7.769±2.13 7.851±1.67 6.039±1.84 2.770±0.39 6.492±0.67 6.652±1.30 4.646±1.05 6.412±1.55 2.138±0.57

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000215 IEA tRNA 2'-phosphotransferase activity
GO:0005575 ND cellular_component
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008665 IDA 2'-phosphotransferase activity
GO:0045859 IMP regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317459 TRPT1-002 protein_coding Homo_sapiens 0 749
ENST00000394546 TRPT1-201 protein_coding Homo_sapiens 0 726
ENST00000394547 TRPT1-001 protein_coding Homo_sapiens 0 717
ENST00000536158 TRPT1-006 retained_intron Homo_sapiens 0 307
ENST00000536234 TRPT1-005 retained_intron Homo_sapiens 0 303
ENST00000537907 TRPT1-012 retained_intron Homo_sapiens 0 209
ENST00000539436 TRPT1-004 retained_intron Homo_sapiens 0 307
ENST00000539595 TRPT1-003 retained_intron Homo_sapiens 0 307
ENST00000541278 TRPT1-202 protein_coding Homo_sapiens 0 486
ENST00000541928 TRPT1-007 retained_intron Homo_sapiens 0 270
ENST00000544286 TRPT1-009 protein_coding Homo_sapiens 0 261
ENST00000545812 TRPT1-015 protein_coding Homo_sapiens 0 475
ENST00000546089 TRPT1-014 protein_coding Homo_sapiens 0 486
ENST00000546133 TRPT1-008 protein_coding Homo_sapiens 0 209

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