C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 3110035E14 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088666 3110035E14Rik-001 ENSMUSG00000067879 10090 + 1:9601199-9627143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENSMUST00000088666
Transcript ID Brain Colon Ovary Placenta Testis
ENSMUST00000088666 16.701±12.03 0.147±0.00 1.031±0.40 0.167±0.00 1.274±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031D CIL_00031D_0002 CGP 1:9547948-9627143
CIL_00031E CIL_00031E_0002 CGP 1:9601199-9700209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305454 C8orf46-001 protein_coding Homo_sapiens 0 869
ENST00000450307 C8orf46-013 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000460144 C8orf46-003 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000480005 C8orf46-006 protein_coding Homo_sapiens 0 342
ENST00000482608 C8orf46-009 processed_transcript Homo_sapiens 0 244
ENST00000484919 C8orf46-005 retained_intron Homo_sapiens 0 322
ENST00000485639 C8orf46-007 processed_transcript Homo_sapiens 0 339
ENST00000519702 C8orf46-019 processed_transcript Homo_sapiens 0 281
ENST00000521495 C8orf46-017 protein_coding Homo_sapiens 0 388
ENST00000522977 C8orf46-014 protein_coding Homo_sapiens 0 311

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