C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089558 Snrpg-201 ENSMUSG00000057278 10090 + 6:86371583-86378902 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089558
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089558 24.346±5.68 16.461±1.99 77.553±7.76 132.817±67.69 19.399±9.73 13.055±2.84 15.707±2.00 25.711±7.30 143.093±148.67 18.140±2.76 25.897±3.46 97.873±130.58 253.313±145.55 52.648±25.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0002 VISTA 6:86179085-86780169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000454064 SNRPGP8-001 processed_pseudogene Homo_sapiens 0 230

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