C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093113 Adamts18-201 ENSMUSG00000053399 10090 - 8:113697126-113848615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093113
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093113 0.224±0.09 0.024±0.01 0.109±0.00 0.895±0.60 0.526±0.15 0.170±0.08 0.016±0.01 0.008±0.00 0.036±0.02 0.028±0.02 0.030±0.01 0.080±0.03 0.170±0.19 0.048±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OG CIL_0003OG_0002 CGP 8:113643213-113848615
CIL_0003OF CIL_0003OF_0002 CGP 8:113697126-114154739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IEA eye development
GO:0003674 ND molecular_function
GO:0004222 IEA metalloendopeptidase activity
GO:0005575 ND cellular_component
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0090331 IMP negative regulation of platelet aggregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282849 ADAMTS18-001 protein_coding Homo_sapiens 0 3858
ENST00000449265 ADAMTS18-002 nonsense_mediated_decay Homo_sapiens 0 1114
ENST00000562332 ADAMTS18-011 protein_coding Homo_sapiens 3e-34 148
ENST00000562345 ADAMTS18-009 protein_coding Homo_sapiens 0 333
ENST00000564369 ADAMTS18-005 processed_transcript Homo_sapiens 0 638
ENST00000567121 ADAMTS18-006 processed_transcript Homo_sapiens 0 593
ENST00000567914 ADAMTS18-008 retained_intron Homo_sapiens 0 658
ENST00000568393 ADAMTS18-010 retained_intron Homo_sapiens 0 483
ENST00000569309 ADAMTS18-007 retained_intron Homo_sapiens 0 368

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